SilkPathDB BLAST | SilkPathDB - Silkworm Pathogen Database

NCBI-BLAST+
BLAST 2 SEQUENCES
[ READ ME ]

Version: ncbi-blast-2.8.1+

Genome
Gene
CDS
Protein
EST
SangerReads

Fungi

Beauveria bassiana ARSEF 2860
Cordyceps militaris CM01
Metarhizium acridum CQMa 102
Metarhizium anisopliae ARSEF 23

Microsporidia

Antonospora locustae
Enterocytozoon bieneusi
Encephalitozoon cuniculi GB-M1
Encephalitozoon intestinalis ATCC 50506
Nosema antheraeae YY
Nosema bombycis CQ1
Nosema ceranae BRL01
Nosema sp. PM-1
Nosema sp. YNPr
Vairimorpha necatrix BM

Bacteria

Bacillus bombysepticus Wang
Bacillus thuringiensis Al Hakam
Bacillus thuringiensis Bc601
Bacillus thuringiensis BMB171
Bacillus thuringiensis Bt185
Bacillus thuringiensis Bt407
Bacillus thuringiensis CTC
Bacillus thuringiensis DAR 81934
Bacillus thuringiensis HD1002
Bacillus thuringiensis HD1011
Bacillus thuringiensis HD12
Bacillus thuringiensis HD571
Bacillus thuringiensis HD682
Bacillus thuringiensis HD-771
Bacillus thuringiensis HD-789
Bacillus thuringiensis HS18-1
Bacillus thuringiensis IBL 200
Bacillus thuringiensis IBL 4222
Bacillus thuringiensis KNU-07
Bacillus thuringiensis MC28
Bacillus thuringiensis MYBT18246
Bacillus thuringiensis serovar andalousiensis BGSC 4AW1
Bacillus thuringiensis serovar alesti BGSC 4C1
Bacillus thuringiensis serovar berliner ATCC 10792
Bacillus thuringiensis serovar chinensis CT-43
Bacillus thuringiensis serovar coreanensis ST7
Bacillus thuringiensis serovar finitimus YBT-020
Bacillus thuringiensis serovar galleriae HD-29
Bacillus thuringiensis serovar huazhongensis BGSC 4BD1
Bacillus thuringiensis serovar indiana HD521
Bacillus thuringiensis serovar konkukian 97-27
Bacillus thuringiensis serovar kurstaki HD-1
Bacillus thuringiensis serovar kurstaki HD73
Bacillus thuringiensis serovar kurstaki T03a001
Bacillus thuringiensis serovar kurstaki YBT-1520
Bacillus thuringiensis serovar morrisoni BGSC 4AA1
Bacillus thuringiensis serovar monterrey BGSC 4AJ1
Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1
Bacillus thuringiensis serovar pulsiensis BGSC 4CC1
Bacillus thuringiensis serovar pakistani T13001
Bacillus thuringiensis serovar sotto T04001
Bacillus thuringiensis serovar tolworthi
Bacillus thuringiensis serovar tochigiensis BGSC 4Y1
Bacillus thuringiensis serovar thuringiensis IS5056
Bacillus thuringiensis serovar thuringiensis T01001
Bacillus thuringiensis XL6
Bacillus thuringiensis YBT-1518
Bacillus thuringiensis YC-10
Bacillus thuringiensis YWC2-8

Virus

Antheraea pernyi nucleopolyhedrovirus H
Antheraea pernyi nucleopolyhedrovirus L2
Antheraea pernyi nucleopolyhedrovirus Liaoning
Autographa californica nucleopolyhedrovirus C6
Autographa californica nucleopolyhedrovirus E2
Bombyx mori cypovirus 1 Suzhou
Bombyx mori densovirus 1
Bombyx mori densovirus 3
Bombyx mori densovirus 5
Bombyx mori densovirus Zhenjiang
Bombyx mori nucleopolyhedrovirus Brazilian
Bombyx mori nucleopolyhedrovirus C1
Bombyx mori nucleopolyhedrovirus C2
Bombyx mori nucleopolyhedrovirus C6
Bombyx mori nucleopolyhedrovirus CQ1
Bombyx mori nucleopolyhedrovirus Cubic
Bombyx mori nucleopolyhedrovirus Guangxi
Bombyx mori nucleopolyhedrovirus India
Bombyx mori nucleopolyhedrovirus T3
Bombyx mori nucleopolyhedrovirus Zhejiang
Bombyx mandarina nucleopolyhedrovirus S1
Bombyx mandarina nucleopolyhedrovirus S2
Lymantria dispar cypovirus 14
Maruca vitrata nucleopolyhedrovirus
Philosamia cynthia ricini nucleopolyhedrovirus
Plutella xylostella nucleopolyhedrovirus
Rachiplusia ou nucleopolyhedrovirus
Thysanoplusia orichalcea nucleopolyhedrovirus
Trichoplusia ni cypovirus 15

Host

Bombyx mori Dazao (SilkBase)
Bombyx mori Dazao (SilkDB)
Papilio machaon ya'a_city_454_Pm
Papilio xuthus ya'a_city_454_Px
Papilio machaon Tokyo

Fungi

Beauveria bassiana ARSEF 2860
Cordyceps militaris CM01
Metarhizium acridum CQMa 102
Metarhizium anisopliae ARSEF 23

Microsporidia

Nosema antheraeae YY
Nosema bombycis CQ1
Nosema ceranae BRL01
Nosema sp. PM-1
Nosema sp. YNPr

Bacteria

Virus

Host

Bombyx mori Dazao (SilkBase)
Bombyx mori Dazao (SilkDB)
Papilio machaon ya'a_city_454_Pm
Papilio xuthus ya'a_city_454_Px
Papilio machaon Tokyo

Fungi

Beauveria bassiana ARSEF 2860
Cordyceps militaris CM01
Metarhizium acridum CQMa 102
Metarhizium anisopliae ARSEF 23

Microsporidia

Bacteria

Virus

Antheraea pernyi nucleopolyhedrovirus L2
Antheraea pernyi nucleopolyhedrovirus Liaoning
Autographa californica nucleopolyhedrovirus C6
Autographa californica nucleopolyhedrovirus E2
Bombyx mori cypovirus 1 Suzhou
Bombyx mori densovirus 1
Bombyx mori densovirus 3
Bombyx mori densovirus 5
Bombyx mori densovirus Zhenjiang
Bombyx mori nucleopolyhedrovirus Brazilian
Bombyx mori nucleopolyhedrovirus C1
Bombyx mori nucleopolyhedrovirus C2
Bombyx mori nucleopolyhedrovirus C6
Bombyx mori nucleopolyhedrovirus CQ1
Bombyx mori nucleopolyhedrovirus Cubic
Bombyx mori nucleopolyhedrovirus Guangxi
Bombyx mori nucleopolyhedrovirus India
Bombyx mori nucleopolyhedrovirus T3
Bombyx mori nucleopolyhedrovirus Zhejiang
Bombyx mandarina nucleopolyhedrovirus S1
Bombyx mandarina nucleopolyhedrovirus S2
Lymantria dispar cypovirus 14
Maruca vitrata nucleopolyhedrovirus
Philosamia cynthia ricini nucleopolyhedrovirus
Plutella xylostella nucleopolyhedrovirus
Rachiplusia ou nucleopolyhedrovirus
Thysanoplusia orichalcea nucleopolyhedrovirus
Trichoplusia ni cypovirus 15

Host

Bombyx mori Dazao (SilkBase)
Bombyx mori Dazao (SilkDB)
Papilio machaon ya'a_city_454_Pm
Papilio xuthus ya'a_city_454_Px
Papilio machaon Tokyo

Fungi

Beauveria bassiana ARSEF 2860
Cordyceps militaris CM01
Metarhizium acridum CQMa 102
Metarhizium anisopliae ARSEF 23

Microsporidia

Bacteria

Virus

Host

Bombyx mori Dazao (SilkBase)
Bombyx mori Dazao (SilkDB)
Papilio machaon ya'a_city_454_Pm
Papilio xuthus ya'a_city_454_Px
Papilio machaon Tokyo

Microsporidia

Nosema bombycis CQ1 spore

Microsporidia

Nosema bombycis CQ1

Program: Expect: Word size: [Integer; blastn: >=4; others: >=2]

Output Format: Standard Table [ Best Hit (>=1): Best Match (>=1): ]

Enter sequence below in FASTA format (EXAMPLE SEQUENCE), or enter SilkPathDB identifiers each with a prefix "ID:" (EXAMPLE IDs).

or load local sequence file in FASTA format:

Program: Expect:

Sequence 1 in FASTA format (or enter a SilkPathDB sequence ID with a prefix 'ID:', for example, ID:BBA_07899):

or load local file 1

Sequence 2 in FASTA format (or enter a SilkPathDB sequence ID with a prefix 'ID:', for example, ID:BBA_07576):

or load local file 2

SilkPathDB BLAST is a set of tools built with NCBI-BLAST+, and used for aligning and searching homologous sequences in the database. It supports aligning aginst multiple databases and exporting matched sequences and regions.

The NCBI-BLAST+ is buit with the latest version of NCBI BLAST+, ncbi-blast-2.8.1+-x64-linux. It supports searching against multiple databases in one run, which is the major difference compared with the NCBI-BLAST and AB-BLAST. The NCBI BLAST+ is an optimized version of the former NCBI BLAST, which is not supported by the National Center for Biotechnology Information (NCBI).

The BLAST 2 SEQUENCES is buit with bl2seq program in the NCBI BLAST package, which can be used to compare two sequences.