EuSecPred - EUkaryotic SECretome PREDiction pipeline

The EUkaryotic SECretome PREDiction pipeline (EuSecPred) aims to screen eukaryotic secretory/excretory proteins by predicting the subcellular localization with programs of tmhmm-2.0c [1], kohgpi-1.5 [2], MitoProtII [3], nucpred-1.1 [4], NLStradamus.1.7 [5], PredictNLS [6], PSORT II [7], WoLF PSORT [8], targetp-1.1 [9], signalp-4.1 [10], SecretomeP-1.0 [11], Phobius [12] and ScanProsite [13].

Restrictions: At most 50 sequences per submission. The email option is encouraged for more than 10 sequences.

Organism Type:    NucPred Threshold:    MitoProtII Threshold:    SecretomeP Threshold:    Email:
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[6] https://rostlab.org/owiki/index.php/PredictNLS.
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[11] Bendtsen JD, Jensen LJ, Blom N, Von Heijne G, Brunak S. Feature-based prediction of non-classical and leaderless protein secretion. Protein Eng Des Sel. 2004, 17(4):349-56.
[12] Lukas Käll, Anders Krogh and Erik L. L. Sonnhammer. A Combined Transmembrane Topology and Signal Peptide Prediction Method. J Mol Biol. 2004, 338(5):1027-1036.
[13] Edouard de Castro1, Christian J. A. Sigrist, Alexandre Gattiker, et al. ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. Nucleic Acids Research. 2006, 34: W362–W365.